Organic Chemistry Semester II

Course information and syllabus, 2005

 

Faculty contact information

Dr. Rachel Jameton                                                                          MLH 231

792-2268                                                                                           rajameton@lcsc.edu

Office hours: MF 9:00 am-10:00, TTh 10:30 am -1:00 pm and by appointment

 

Introduction

            Welcome to your second semester of organic chemistry.  Last semester, we focused on structure and determination of structure with spectroscopy.  This time we will focus on structure and synthesis, applying your understanding of structural and electronic motifs to new mechanisms and new reactions.  We will explore classic synthetic routes and biosynthetic routes, as well.  For those of you who are planning a career in chemistry, this course will be an introduction to synthesis, structure, characterization and mechanism. For those of you planning a career in biology, environmental science, toxicology or medicine, this will be an introduction to the molecules and reactions found in nature. 

 

Goals

(1)   To visualize how molecules interact with one another, how those interactions depend on functional groups and how the interactions lead to reactions.

(2)   To predict the reactivity of molecules based on structure and electronics.

(3)   To connect physical properties of materials to their molecular structure.

(4)   To propose reasonable mechanisms based on observations.

(5)   To apply creativity and logic to the solution of synthetic problems.

 

Texts

McMurry Organic Chemistry 6th ed. Thomson/Brooks/Cole, 2004 bundled with study guide/answer book.

 

McMurry takes a great deal of pride in writing clearly, logically and succinctly.  The text comes with access to a website that offers review questions and images that you may find helpful for visualizing reactions. 

            In addition to the text, you will also need a molecular model kit, a lab notebook and goggles.  These items are available in a wide variety of prices and styles.  If you do not have these items, please ask me for details

 

Attendance, assignments and tests

            Classes are composed of lectures, group discussion and in-class problem solving.  Because you will work through many problems in class, attendance and participation in class count heavily toward your grade (see grade distribution below).  

There are several types of assignments for this course, as follows:

A weekly problem set: These will primarily come from your text.  You will hand all of your problems in and be asked to write rationales for selected problems.  These rationales will be a few sentences that describe your thought process in arriving at your answer.  The purpose of asking you to write rationales is twofold.  First, I want to make sure that you are using a thought process that is generally applicable to a variety of circumstances.  Second, I want to make sure that you can clearly communicate your process. 

As part of your text package, you have the complete solutions to the problems that I assign.  As you know, there are useful and not so useful ways of using this solution book.  Useful includes checking your answers or getting help when you are truly stuck.  Not so useful involves checking the solutions prematurely, before you are actually stuck.

There will be approximately fourteen problem sets at 20 points each. 

Brief essays: You will be asked to write reflections on Nobel lectures and connections between lab, course material and your life.  Each of five essays will be about a page long and you can receive a maximum of 20 points for each.

Class preparation:  Every week, I will ask you to hand in a few sentences about the chapter that we will be covering that week.  In other words, you will need to look through the chapter yourself and pick out topics that look important and questions you may have.  The purpose of doing this is to make sure that you have an idea of the material before you come to class.  You may find that this makes the in-class portion of this course easier for you by helping you identify which areas you have questions about. 

There will be approximately fourteen class preparations at 5 points each.

Exams: We will have three one-hour tests plus one cumulative final with an emphasis on the chapters not covered in previous tests.  These tests will be formatted identically with a multiple choice section, a short answer section and a choice of essay questions from which you will answer one or two.  Your exam scores will be averaged and not curved.  Instead of grading on a curve, I will make sure that tests are fair and are written toward having a 75% average score. 

 

Grade distribution

Class attendance and participation                                                            150 points

Problem sets (14@20 points each)                                                            280 points

Short essays (5@20 points each)                                                              100 points

Class preparation (14@5 points each)                                                      70 points

3 tests + 1 final (4@100 points each)                                                        400 points

total                                                                                                                 1000 points

 

Grading scale

 

93-100%

A

83-86%

B

73-76%

C

60-66%

D

90-92%

A-

80-82%

B-

70-72%

C-

<60%

F

87-89%

B+

77-79%

C+

67-69%

D+

 

 

 

 

 

 

 

 

Plagiarism policy

The vast majority of students are honest. However, in the rare instance that plagiarism (or cheating, fabrication or collusion) is apparent, it will be dealt with in accordance with college policy. 

 

Special needs

            If you have any special needs such as a documented learning disability or other situation that limits your access or ability to participate in class or lab, please discuss the situation with me as soon as possible so we can make appropriate arrangements. Assistance with accommodations can also be found at the Office of Student Life, room 111 Reid Centennial Hall.

 

Late homework, making up exams, incompletes and drops

            Late homework will be accepted at 50% of its point value until the homework has been returned to the rest of the class.  After return of homework, late homework will not be accepted. 

            If you must miss an exam, discuss your situation with me before the exam to make alternate arrangements.  It may not be possible to arrange an exam time if you do not notify me before the exam.  No student will be allowed to make-up more than one exam. 

            There will be no incompletes awarded for students with less than an 80% average at the time of the incomplete.  The course cannot be dropped after March 25. 

 

Email contact and the website

            Your WarriorWeb e-mail account is the official method of communication between the college and yourself and so you should check your account daily.  If you have trouble accessing your account, make sure you work out the problems as soon as you can by calling or stopping by the computer help desk (located at SGC B102 or phone 792-2231).

            Our class does have a website (http://www.lcsc.edu/rjameton/ochem2home.htm).  At the website, you can find this syllabus and handouts, as well as links to sites that you might find interesting or helpful. 

 

Timeframe

dates

Content

1/10-1/14

Chapter 9: Stereochemistry

1/19-1/21

No class on Monday

Chapter 9: Stereochemistry

Chapter 10 and 11: Alkyl halides

1/24-1/28

Chapter 10 and 11: Alkyl halides

1/31-2/4

Test 1: Stereochemistry and alkyl halides

Chapter 8: Alkynes

2/7-2/11

Chapter 15: Benzene

2/14-2/18

No class on Monday

Chapter 16: Chemistry of benzene

2/21-2/25

Chapter 16: Chemistry of benzene

Brief review of organic reactions

2/28-3/4

Test 2: Alkyl halides, alkynes and aromatics

Chapter 17: Alcohols and phenols

3/7-3/11

Chapter 17: Alcohols and phenols

Chapter 18: Ethers and epoxides

3/14-3/18

Spring break

3/21-3/25

Introduction to carbonyls

Chapter 19: Aldehydes and ketones

3/28-4/1

Chapter 19: Aldehydes and ketones

4/4-4/8

Test 3: Alcohols, phenols, ethers, epoxides and carbonyls

4/11-4/15

Chapter 20: Carboxylic acids

4/18-4/22

Chapter 21: Carboxylic acid derivatives (particularly amides)

4/25-4/29

Catch-up and applications

5/2-5/6

Research presentations and review

May 9 10:30 am

Test 4: Final

 

Date: 8/5/04

Contact: rajameton@lcsc.edu

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